Leica Microsystems
Correlation of Fluorochromes and Filter Cubes
Fluorochrome Filtercube
Widefield
Filtercube
Stereo
(Leica M165 FC, M205 FA, M16 F/FA)
Filtercube
Stereo
(Leica MZ10 F, MZ FLIII)
Filtercube
Dicroic
Acid fuchsin
M2
N2.1
-
-
-
ACMA
E4
-
-
-
Acridine blue
A
-
-
-
Acridine orange
H3
I3
Acridine Orange (+RNA)
FITC
Acridine red
N2.1
N3
TRITC
Acridine yellow
H3
I3
-
-
-
Acriflavin
E4
H3
-
-
-
Acriflavin-Feulgen-SITS (AFS)
D
-
-
-
Alexa 350
A4
-
-
-
Alexa 488
L5
FITC/Alexa488
GFP3
GFP3/CY3
Alexa 532
N3
-
-
-
Alexa 546
Y3
TRITC
Alexa 555
Y3
-
-
-
Alexa 568
TX2
ALexa568 (II)
ALexa568 (RHODAMINE)
dsRED1
TxRED
Alexa 594
Alexa 594
TX2
-
-
-
Alexa 633
Y5
-
-
-
Alexa 647
Y5
-
-
-
Alexa 700
Y7
-
-
-
Alizarin complexion
N2.1
-
-
-
Alizarin red
N2.1
-
-
-
Allophycocyanin (APC)
Y3
Y5
-
-
-
AMCA (Aminocoumarin)
A
DAPI
DAPI
AMCA/FITC/Texas Red
B/G/R
-
-
-
AmCyan
AM cyan
Aminoactinomycin D-AAD
N2.1
N3
-
-
-
Aniline blue
A
-
-
-
Astrazone Brilliant Red 4G
N2.1
-
-
-
Astrazone Orange R
I3
L5
-
-
-
Astrazone Red 6B
N2.1
-
-
-
Astrazone Yellow 7 CLL
H3
-
-
-
Atabrine
E4
H3
-
-
-
Auramine
H3
I3
-
-
-
Aurophosphine, Aurophosphine G
H3
I3
-
-
-
BCECF
FURA2
L5
-
-
-
Benzoxanthen Yellow
D
-
-
-
Berberine sulphate
H3
-
-
-
Beta-Lactamase
S Blue/Aqua
Violet2
MZ16 FA
Violet2
BFP/GFP (simultaneous)
BFP/GFP
-
-
-
BisAminophenyl Oxdiazol (BAO)
A
-
-
-
Bisbenzimide (Hoechst)
A
D
DAPI
DAPI
DAPI/FITC/TRITC
Blancophor BA
A
D
H3
-
-
-
Blancophor SV
A
-
-
-
BODIPY FL
I3
K3
L5
-
-
-
Brilliant Sulphaflavine FF
D
H3
-
-
-
Bromobimane (Thiolyte)
D
-
-
-
Calcein
I3
-
-
-
Calcein blue
A
-
-
-
Calcium Crimson
Alexa 594
Y3
-
-
-
Calcium Green
I3
K3
L5
-
-
-
Calcium Green-1
YFP HP
-
-
-
Calcium Orange
M2
N2.1
-
-
-
Calcofluor White
D
H3
-
-
-
Calcofluor White standard solution
A
-
-
-
Carboxyfluorescein diacetate C-FDA
I3
L5
-
-
-
Cascade Blue
A
D
-
-
-
Catecholamines (adrenalin, noradrenalin, dopa, dopamine)
D
-
-
-
CFP
CFP
CFP
CFP/DsRed
CFP/YFP
CFP/YFP/dsRED
ET-CFP 460 LP
CFP
CFP/YFP
ECFP / DsRed
CFP
CFP/YFP
CFP/YFP/dsRED
CFP/YFP (simultaneous)
CFP/YFP
CFP/YFP
CFP/YFP
CFP/YFP
CFP/YFP/dsRED
Chromomycin A (mithramycin, olivomycin)
E4
-
-
-
Coriphosphine O
H3
I3
-
-
-
Coumarin-phalloidin
D
-
-
-
Cy 2(TM)
GFP CY2
GFP3
GFP3/CY3
GFP3/mCherry
GFP3
GFP3
GFP3/CY3
GFP3/mCherry
GFP3/TXR
Cy 3
CY3/CY5
Y3
CY3
DAPI/FITC/TRITC
DIL
DSR
FITC/CY3
FITC/CY3/CY5
CY3
GFP/CY3/CY5
Cy 5
CY3/CY5
CY5
Y5
CY5
CY5 NB
CY5 visual
FITC/CY3/CY5
CY5
CY5
GFP/Cy5
Cy 5.5
Y 5.5
CY5.5
CY5.5
Cy5.5
Cy5.5
CY 5.5
Cy 7
Y7
CY7
Cy7
TxRedEx/Cy7Em
CY 7
Cy3/TRITC
CY3/TRITC
-
-
-
Cyan-Yellow-/Red-FP (simultaneous)
CFP/YFP/DsRed
-
-
-
CyQuant
GFP CY2
-
-
-
DANS (diamino-naphtyl sulphonic acid)
A
-
-
-
Dansyl chloride
A
-
-
-
DAPI
Analyser
ALexa568 (II)
Blue
CFP
DAPI (selective)
A4
-
-
-
DAPI/FITC
B/G
DAPI/FITC/PI
DAPI/FITC/TRITC
DAPI/FITC/TXR
DAPI/FITC/TXR
DAPI/FITC/TxRed
DAPI/FITC/CY3
DAPI/FITC/CY3
DAPI/FITC/TRITC
DAPI/FITC/Texas Red (simultaneous)
B/G/R
DAPI/FITC/TXR
DAPI/FITC/TXR
DAPI/FITC/TxRed
DAPI/TRITC
B/R
DAPI/FITC/TRITC
DHE
DHE
DHE Yellow/RED
Di-8-ANEPPS
Di-8-ANEPPS
DIA
DIA
DiI
Y3
DIL
DiO
GFP CY2
I3
K3
FITC
Diphenyl brilliant flavine 7 GFF
H3
-
-
-
DIPI
A
-
-
-
Dopamine
A
-
-
-
DPH (diphenyl hextariene)
A
-
-
-
EGFP
Alexa 594
GFP CY2
EGFP
eGFP/dsRED
GFP3
GFP3/CY3
GFP3/mCherry
GFP3
DsR/EGFP
DsR/EGFP
GFP3
GFP3/CY3
GFP3/mCherry
GFP3/TXR
Eosin B
N2.1
YFP HP
-
-
-
Ethidium bromide
N2.1
Eth.Brom.
Euchrysin
D
H3
-
-
-
Evans Blue
N2.1
-
-
-
Fast Blue
A
-
-
-
Fast Green FC G
M2
N2.1
-
-
-
FDA (fluorescein diacetate)
H3
I3
K3
L5
-
-
-
Feulgen
N2.1
TX2
-
-
-
FIF (formaldehyde induced fluorescence)
D
A
Violet2
MZ16 FA
Violet2
FITC (fluorescein isothiocyanate)
H3
I3
K3
L5
FITC
FITC / Texas Red
FITC/Alexa488
FITC/CY3
FITC/CY3/CY5
FITC/TRITC
GFP/tdTomato
DAPI/FITC/TXR
FITC
GFP/tdTomato
DAPI/FITC/TxRed
GFP3/mCherry
FITC (selective)
L5
-
-
-
FITC/CY3/CY5
FITC/CY3/CY5
-
-
-
FITC/ethidium bromide
I3
L5
N2.1
-
-
-
FITC/phycoerithrin (PE) (simultaneous)
G/R
-
-
-
FITC/Texas Red (simultaneous)
FITC/Texas Red
G/R
FITC / Texas Red
FITC/TRITC (simultaneous)
FI/RH
FITC/TRITC
Fluo 3
I3
L5
YFP HP
FITC
FITC
Fluoro Gold
A
-
-
-
Fluram (fluorescamine)
A
-
-
-
FURA2
FURA2
-
-
-
Genacryl Brilliant Red B
N2.1
N2.1
Genacryl Brilliant Yellow
E4
-
-
-
Generic Blue
D
-
-
-
GFP (Green Fluorescent Protein)
GFP
GFP CY2
GFP (Narrowband)
EGFP
eGFP/dsRED
GFP LP
GFP LP
GFP LP500
GFP NB
GFP1
GFP1
NB
GFP2
GFP2Plus
GFP3
GFP3/CY3
GFP3/mCherry
GFP#1
GFP#2
GFP/mRFP-1
GFP/tdTomato
GFP LP
GFP2
GFP3
GFP/tdTomato
DsR/EGFP
DsR/EGFP
GFP
GFP2
GFP3
GFP3/CY3
GFP3/mCherry
GFP3/TXR
GFP/CY3/CY5
GFP/Cy5
GFP/dsRED
Granular Blue
A
-
-
-
Haematoporphyrin
N2.1
-
-
-
HcRed
HcRED
HcRED LP
HcRED
Hoechst dye no. 33258
A
A4
D
-
-
-
Hoechst dye no. 33342
A
A4
D
-
-
-
Hydroxy-4-methylcoumarin
A
-
-
-
Indocyanine green
Indocyanine green
IRDye800
IR Dye 800
JP1
JP1
-
-
-
JP2
JP2
-
-
-
JRed
JRed
Keima
Keima Red
Keima
Lissamine-rhodamine B (RB 200)
M2
N2.1
-
-
-
Lucifer Yellow
E4
Luciferase for MZ16F/FA
Magdala Red
N2.1
-
-
-
Maleimide
A
-
-
-
Mepacrin
D
-
-
-
Merocyanin 540
N2.1
-
-
-
Mithramycin
E4
-
-
-
MitoSOX red
MitoSOX red
MPS (methyl Green Pyronine stilbene)
A
-
-
-
mTFP
mTFP1
Nile Red
TX2
-
-
-
Nuclear Fast Red
M2
N2.1
N3
-
-
-
Nuclear Yellow
A
-
-
-
Olivomycin
E4
-
-
-
Oregon Green (488, 500, 514)
L5
-
-
-
Oxytetracycline
D
-
-
-
Pararosaniline (Feulgen)
N2.1
TX2
-
-
-
Phosphine 3 R
H3
I3
-
-
-
Phtalocyanine
Phtalocyanine
Phycoerythrin (PE)
N2.1
N3
Orange
Phycoerythrin
Phycoerythrin R
Orange
Phycoerythrin R
Primulin O
D
-
-
-
Procion Yellow
D
E4
H3
-
-
-
Propidium iodide
N2.1
FITC / Texas Red
N2.1
Pyronine B
M2
N2.1
-
-
-
Qdot 525
Qdot525
Qdot 585
Qdot585
Qdot 625
Qdot 625
Qdot605
Qdot 605
Qdot 605
Quinacrine mustard (QM)
E4
Quinacrine
Resorufin
N2.1
Y3
-
-
-
Reverine
D
-
-
-
RFP
Red GFP
dsRED2
Filter set RFP
RFP
Rhodamine 123
I3
L5
YFP HP
-
-
-
Rhodamine B
N2.1
-
-
-
RS-GFP (Narrowband)
Alexa 594
-
-
-
Serotin
A
D
-
-
-
sgGFP (TM)
GFP CY2
-
-
-
SITS acriflavine Feulgen
D
-
-
-
SITS (stilbene isothiosulphonic acid)
A
-
-
-
Spectrum Aqua
S Aqua
-
-
-
Spectrum Blue
S Blue
-
-
-
Spectrum Blue/Aqua
S Blue/Aqua
-
-
-
Spectrum FRED
S FRED
-
-
-
Spectrum Gold
S Gold
-
-
-
Spectrum Green
S Green
-
-
-
Spectrum Orange
M2
N2.1
S Orange
-
-
-
Spectrum Red
S Red
-
-
-
Sulphaflavine
A
-
-
-
SZ green
SZ green
tdTomato
GFP/tdTomato
GFP/tdTomato
Tetracyclines: oxytetracycline, tetracycline, reverine (pyrrolidinomethyltetracycline), chlortetracycline, dimethylchlortetracycline
D
Violet2
MZ16 FA
Violet2
Texas Red
TX2
DAPI/FITC/TXR
dsRED1
FITC / Texas Red
mCherry
TXR
TxRedEx/Cy7Em
DAPI/FITC/TXR
mCherry
TXR
TxRED
DAPI/FITC/TxRed
GFP3/mCherry
TXR
Texas Red (selective)
TX2
-
-
-
Thiazin red R
M2
N2.1
-
-
-
Thioflavine S
D
H3
-
-
-
Thioflavine TCN
A
-
-
-
Thiolyte (bromobimane)
D
A
-
-
-
TRITC (selective)
N3
-
-
-
TRITC (selective)
N3
-
-
-
TRITC (tetramethyl rhodamin isothiocyanate)
N2.1
N3
DAPI/FITC/TRITC
FITC/TRITC
TRITC
True Blue
A
-
-
-
TurboFP635
TurboFP635
Uranine B
H3
-
-
-
Uvitex 2 B
A
D
-
-
-
wtGFP (non UV)
GFP CY2
wt GFP Bandpass
XenoFluor 680
XenoFluor 680
XRITC
N2.1
N3
-
-
-
Xylene orange
M2
N2.1
-
-
-
YFP
YFP
YFP HP
CFP/YFP
CFP/YFP/dsRED
YFP
YFP II
YFP1
YFP/DsRed
CFP/YFP
YFP
CFP/YFP
CFP/YFP/dsRED
YFP
YO-PRO-1
GFP CY2
-
-
-
YOYO-1
GFP CY2
-
-
-
ZsYellow
ZSYellow1